Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015918900.1_cds_XP_016468220.1_60885
CDS Infomation

[gene=LOC107790773] [db_xref=GeneID:107790773] [protein=CRS2-associated factor 1, chloroplastic-like isoform X2] [protein_id=XP_016468220.1] [location=complement(join(70477..71502,71652..71779,71862..72087,73363..73490,74455..75265))] [gbkey=CDS]
Sequence

ATGGGTTCAAGAACCCTAATCCAATTCCCAATTTTCTCACCACCTGCTCCACCACACAAC
CACCGGCCAGCCACTGAAGTCCGCTTCTCCCGTTGGAACAACGCCAATGCCGAGAAATTC
ATCCGCCATGAACGAACTCAGAAGGAAATCGAAGACGAAATCCGCTTCCATAAACGCTTC
GATTCAGCTCTCAATATTGCCAATAATTATAACCCTGCCCCTCCAACCCCCATCACTGAA
AAAAAAACCTTCAAATCCATTGGCACTCCTTCATCTCCCTCTTCACCTTCCATCCCCGGA
AAAAAATCAAAATATTCCAGGAACTTCCAGAAAAATACACACCCCGCATTTAAACCTTTT
GTTAGACCCAGGAACATTCCAAAAGATTCTGGAGAAACAACAGAAAAATCAGCTATTGAT
ATTAAAGTTGATGAAAATGGTGTTTGTTATGAATTCCCAGAAGCTCCTTTCGTGTATCAG
TACAGTTATACTGAAACACCAAAGTTGAAGCCTAATAAGTTGCGTGAACCGTTAGTGTCA
CCATTTGGACCGGAGTCAATGCGGAGGCCATGGACCGGTCGGAAACCATTGCCTCCGAGC
AAGAAGAACCTTCCAGAATTTGATTCGTTTAAGCTTCCGCCCCCCCATAAAAAAGGGGTA
AAGCCGGTTCAGGCTCCTGGACCATTCCTGGCAGGGTCCGGGCCCAAGTATGTTAGGTCT
AGAGAGGAGGTATTGGGAGAGCCATTGACCAAGGAAGAAATGATGCAGCTTATAGATAGT
TGTAAGAAAACAACACGGCAATTGAATATAGGACGAGATGGCTTAACACATAACATGTTG
GAGAATATCCATGCTCACTGGAAGCGGAAAAGGGTGTGCAAGATAAAATGCAAGGGAGTG
TGTACTGTGGACATGGACAATGTCTGTGACAAGTTAGAGGAAAAGACAGGTGGGAAAATT
ATCTATCATAAAGGTGGTTTGATATACCTTTTCCGTGGTCGAAACTACAACTATAAGACT
CGGCCACGCTTTCCTCTCATGTTATGGCGGCCTGTGACTCCTGTATACCCAAGGTTGGTC
CAACGAGTTCCCGAGGGTTTGACTTTAGAGGAAGCAACTGAAATGCGGAAAAAAGGACGC
AATCTGATACCTATCTGCAAGCTTGGGAAAAATGGGGTGTATTGTGACCTTGCGAAGAAT
ATCAGAGAAGCATTTGAAGCTTGTGAATTGGTGCGTATAAATTGTCAAGGAATGAACCCA
AGTGACTATAGGAAGATAGGTGCCAAGCTTAAGGATCTTGTCCCATGTGTGTTAATCTCT
TTTGAGCAAGAGCACATACTCATGTGGAGAGGATGGGATTGGGTATCCTCTCTACCTGAT
GACAAAGAGAAACCTGAGAGAAGGAAGGGTTCTAAAGCTGATAATGCTGCCAGCAATTAC
CGATCGTTTGAAGGCCAACTGGTTGAATCTACATCAGGAAGTCCAAGCTTACTAATTACA
GAAATGAATCCTTGCAATCTCAGTGCTAATGTTTCTCCTCTGGTTGAGGAAGATGCAGAA
TATGTAAGAAGCAATGTTACAGAGGAAGATGGATCAAAGGGTACCTATTTGGAATCTTCC
AATAAGGTTCCTTTAGATGTTAGTGCTGTTACAACTAGGGAGGAGATCAGTGGAAGTGAA
AGCCCTCCGGTGTATGCAGGAGATGATACAGGTGACAATTCTAGAATTCTTAGTGAGTGC
AAAACAAGGTTGGATGATTCAGTTGTGCCAGAAAAAGTGGTGAGGAGTGCTTCAGATGAT
GTAAACAAATCTGATTCCTCATCTTTGGTTCCGTTGACTGGTTACGAGGTACATTCTGTA
TCCGAAGATACAAACCAGTGCTATCAGCTGGTAAGCTCAAGTGCACCCTGGACGGAGGGA
ATTTTACTACTTCGGAAGCAGGCTATTGAAAGTGGGAGTGCGGTCCTATTAGATGATTCT
AGTTTGGATGCTGACATTGTGTACGAAAGGGCAGTTACTCTCTCCAGGTCTGCCCCACCC
GGACCAGTTTTTCAGCATCGGTCTAAGAAAGTGCCAGTTCAGAGACCTGAGGGAGAAGAA
ACTGGTGATTTGGAGGTACAAGGCACTAAAAACTCACTAACTTCGTCGAGAAAAGAAACT
GTTGTTTCTGGTAGAAGAGAAACTGCTTTTTCAGGTAGTAAAGCCAATTCAACAAAGAGT
ACTAGAAAGGAGAAGATGAAGGGTATTAGAGAAGATTATCTAAATGTAGTACCAAAAGGA
AGCTTAGGAGTAGATGAGCTTGCGAAATTACTAGCTTAG

Peptide Sequence

PEP ID

XP_016468220.1
PEP Infomation

PREDICTED: CRS2-associated factor 1, chloroplastic-like isoform X2 [Nicotiana tabacum]
Sequence

MGSRTLIQFPIFSPPAPPHNHRPATEVRFSRWNNANAEKFIRHERTQKEIEDEIRFHKRF
DSALNIANNYNPAPPTPITEKKTFKSIGTPSSPSSPSIPGKKSKYSRNFQKNTHPAFKPF
VRPRNIPKDSGETTEKSAIDIKVDENGVCYEFPEAPFVYQYSYTETPKLKPNKLREPLVS
PFGPESMRRPWTGRKPLPPSKKNLPEFDSFKLPPPHKKGVKPVQAPGPFLAGSGPKYVRS
REEVLGEPLTKEEMMQLIDSCKKTTRQLNIGRDGLTHNMLENIHAHWKRKRVCKIKCKGV
CTVDMDNVCDKLEEKTGGKIIYHKGGLIYLFRGRNYNYKTRPRFPLMLWRPVTPVYPRLV
QRVPEGLTLEEATEMRKKGRNLIPICKLGKNGVYCDLAKNIREAFEACELVRINCQGMNP
SDYRKIGAKLKDLVPCVLISFEQEHILMWRGWDWVSSLPDDKEKPERRKGSKADNAASNY
RSFEGQLVESTSGSPSLLITEMNPCNLSANVSPLVEEDAEYVRSNVTEEDGSKGTYLESS
NKVPLDVSAVTTREEISGSESPPVYAGDDTGDNSRILSECKTRLDDSVVPEKVVRSASDD
VNKSDSSSLVPLTGYEVHSVSEDTNQCYQLVSSSAPWTEGILLLRKQAIESGSAVLLDDS
SLDADIVYERAVTLSRSAPPGPVFQHRSKKVPVQRPEGEETGDLEVQGTKNSLTSSRKET
VVSGRRETAFSGSKANSTKSTRKEKMKGIREDYLNVVPKGSLGVDELAKLLA

Transcript Sequence

Gene sequence data has not been registered.